Glyma05g08060 - SoyBase

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Report for Sequence Feature Glyma05g08060

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7992847
stop:	7997074
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08510	AT	Annotation by Michelle Graham. TAIR10: fatty acyl-ACP thioesterases B \| chr1:2691546-2693409 REVERSE LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000036	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0016297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity	SoyBase	N/A	ISS
GO:0016790	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiolester hydrolase activity	SoyBase	N/A	ISS
PF01643	PFAM	Acyl-ACP thioesterase	JGI		ISS
PF12590	PFAM	Acyl-ATP thioesterase	JGI		ISS
UniRef100_B1MVG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-ACP thioesterase n=1 Tax=Glycine max RepID=B1MVG6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K1B6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1B6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g08060

Locus	Gene Symbol	Protein Name
	FATB1A	16:0-acyl carrier protein (ACP) thioesterase enzyme

Expression Patterns of Glyma05g08060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08060

Paralog	Evidence	Comments
Glyma17g12940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g012300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g08060

Limit To All Plant Sequences

>Glyma05g08060.3   sequence type=transcript   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTATTCATTCATTCATTCCTCTTTCTCTCTGATCGCAAACTGCACCTCTACGCTCCACTCTTCTCATTTTCTCTTCCTTTCTCGCTTCTCAGATCCAACTCCTCAGATAACACAAGACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGCGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCAAACCTTGGAGGACTAAAATCCAAATCTGCGTCTTCTGGTGGCTTGAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAAGCTTCAAGCATGATGATGATCTACCTTCGCCTCCCCCCAGAACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCACGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTAACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTGTATGTCAACTAGTTTTTTTTCTAATTGCTGTCATTAATTTATTTTCTCAAATTATTTCAGATGTTGTTTTCTAATTAGTTTACATAATGCATCTTCATTTTGCAGCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCATGACTTTAGAGTATAGGAGAGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGCGGGCATGTTGAGTGCAAGCATTTGCTTCGACTGGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGATTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGTCCCTGGGGAGAGTTTTGCTTGTGTCTATCCAATCAATCTACATGTCTTTATATATATACACCTTCTAATTTGTGATACTTTGGTGGGTAAGGGGGAAAAGCAGCAGTAAATCTCATTCTCATTGTAATTAGCTACTGCTGTATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGTTCAAAATAGCTAGGCATGTATATTATTATTCTTTTTCTCTTGGCCCAATTAAAGATGCAATTTTCCTTGTGAACACAGCATAATTCTTATTCTTATTTATTTTTGTATATCCTGTATGCAAGAATGACTTGTCCTCCAATACAACTGTGATTTTGTATGCTCCAGCTTGTATTTTATGCCAGCTTCCCACATGGGAATTATTGTGC

>Glyma05g08060.4   sequence type=transcript   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATGCTAATGCCTTATCCCTAACTCATAACACAATTACACTGTCTCTCTCTTTTCCAAAATTAGGGAAACAACAAGGACGCAAAATGACACAATAGCCCTTCTTCCCTGTTTCCAGCTTTTCTCCTTCTCTCTCTCCATCTTCTTCTTCTTCTTCACTCAGTCAGATCCAACTCCTCAGATAACACAAGACCAAACCCGCTTTTTCTGCATTTCTAGACTAGACGTTCTACCGGAGAAGCGACCTTAGAAATTCATTATGGTGGCAACAGCTGCTACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCAAACCTTGGAGGACTAAAATCCAAATCTGCGTCTTCTGGTGGCTTGAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAAGCTTCAAGCATGATGATGATCTACCTTCGCCTCCCCCCAGAACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCACGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTAACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCATGACTTTAGAGTATAGGAGAGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGCGGGCATGTTGAGTGCAAGCATTTGCTTCGACTGGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGATTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGTCCCTGGGGAGAGTTTTGCTTGTGTCTATCCAATCAATCTACATGTCTTTATATATATACACCTTCTAATTTGTGATACTTTGGTGGGTAAGGGGGAAAAGCAGCAGTAAATCTCATTCTCATTGTAATTAGCTACTGCTGTATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGTTCAAAATAGCTAGGCATGTATATTATTATTCTTTTTCTCTTGGCCCAATTAAAGATGCAATTTTCCTTGTGAACACAGCATAATTCTTATTCTTATTTATTTTTGTATATCCTGTATGCAAGAATGACTTGTCCTCCAATACAACTGTGATTTTGTATGCTCCAGCTTGTATTTTATGCCAGCTTCCCACATGGGAATTATTGTGCAAA

Coding sequences of Glyma05g08060

Limit To All Plant Sequences

>Glyma05g08060.1   sequence type=CDS   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCTACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCAAACCTTGGAGGACTAAAATCCAAATCTGCGTCTTCTGGTGGCTTGAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAAGCTTCAAGCATGATGATGATCTACCTTCGCCTCCCCCCAGAACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCACGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTAACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCATGACTTTAGAGTATAGGAGAGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGCGGGCATGTTGAGTGCAAGCATTTGCTTCGACTGGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma05g08060.3   sequence type=CDS   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCTACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCAAACCTTGGAGGACTAAAATCCAAATCTGCGTCTTCTGGTGGCTTGAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAAGCTTCAAGCATGATGATGATCTACCTTCGCCTCCCCCCAGAACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCACGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTAACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTGTATGTCAACTAGTTTTTTTTCTAATTGCTGTCATTAATTTATTTTCTCAAATTATTTCAGATGTTGTTTTCTAA

>Glyma05g08060.4   sequence type=CDS   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCTACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCAAACCTTGGAGGACTAAAATCCAAATCTGCGTCTTCTGGTGGCTTGAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAAGCTTCAAGCATGATGATGATCTACCTTCGCCTCCCCCCAGAACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCACGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTTGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTGGTTACTCGGATGCAGGTTGTGGTGGAACGCTATCCTACATGGGGTGACATAGTTCAAGTGGACACTTGGGTTTCTGGATCAGGGAAGAATGGTATGCGCCGTGATTGGCTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTAACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCATGACTTTAGAGTATAGGAGAGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGCGGGCATGTTGAGTGCAAGCATTTGCTTCGACTGGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

Predicted protein sequences of Glyma05g08060

Limit To All Plant Sequences

>Glyma05g08060.1   sequence type=predicted peptide   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSASSGGLKAKAQAPSKINGTTVVTSKESFKHDDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVERYPTWGDIVQVDTWVSGSGKNGMRRDWLLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSPRWSDLDINQHVNNVKYIGWILESAPQPILESHELSSMTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPVNNFGVVNQVPAEST*

>Glyma05g08060.3   sequence type=predicted peptide   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSASSGGLKAKAQAPSKINGTTVVTSKESFKHDDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVERYPTWGDIVQVDTWVSGSGKNGMRRDWLLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSVCQLVFFLIAVINLFSQIISDVVF*

>Glyma05g08060.4   sequence type=predicted peptide   gene model=Glyma05g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSASSGGLKAKAQAPSKINGTTVVTSKESFKHDDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVERYPTWGDIVQVDTWVSGSGKNGMRRDWLLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSPRWSDLDINQHVNNVKYIGWILESAPQPILESHELSSMTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPVNNFGVVNQVPAEST*

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